Plot residual correlations based on latent factors

Plot residual correlation estimates from Joint Species Distribution (jsdgam) or dynamic factor (mvgam) models

Usage

# S3 method for mvgam_residcor
plot(x, cluster = FALSE, ...)

Arguments

x

list object of class mvgam_residcor resulting from a call to residual_cor(..., summary = TRUE)

cluster

Logical. Should the variables be re-arranged within the plot to group the correlation matrix into clusters of positive and negative correlations? Defaults to FALSE

...

ignored

Value

A ggplot object

Details

This function plots the significant residual correlations from a mvgam_residcor object, whereby the posterior mean (if robust = FALSE) or posterior median (if robust = TRUE) correlations are shown only those correlations whose credible interval does not contain zero. All other correlations are set to zero in the returned plot

See also

jsdgam(), lv_correlations(), residual_cor()

Author

Nicholas J Clark